PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G091200.1.p
Common NameGLYMA_05G091200, LOC100794096
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 534aa    MW: 59057.7 Da    PI: 6.4678
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G091200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17178227155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.05G091200.1.p 178 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 227
                          78*******************......55************************997 PP

2AP243.76.8e-14270320155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Glyma.05G091200.1.p 270 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 320
                          89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-15178236IPR016177DNA-binding domain
PfamPF008476.3E-9178227IPR001471AP2/ERF domain
SMARTSM003802.0E-31179241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-17179235IPR001471AP2/ERF domain
PROSITE profilePS5103217.596179235IPR001471AP2/ERF domain
CDDcd000182.79E-11179236No hitNo description
SuperFamilySSF541716.34E-17270330IPR016177DNA-binding domain
CDDcd000183.65E-25270330No hitNo description
PfamPF008471.5E-9270320IPR001471AP2/ERF domain
PROSITE profilePS5103215.461271328IPR001471AP2/ERF domain
SMARTSM003803.1E-31271334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-16271328IPR001471AP2/ERF domain
PRINTSPR003675.2E-6272283IPR001471AP2/ERF domain
PRINTSPR003675.2E-6310330IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MWDLNDSPDQ RINKDEESEE GCSSLNKTSF DGDDDNNNNK GKRVGSVSNS SSSAVVIGDG  60
SEEEYEEEEE DEEGVGVGGG RSMKKRSSKI FGFSVTQNEE ESMDSDHPPV TRQFFPVEDA  120
DVAVATGGGG TGVSSTFPRA HWVGVKFCQS ETLGTGKSSV EVSQPMKKSR RGPRSRSSQY  180
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFNIEDYE  240
DDLKQMSNLT KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL  300
FDTEIEAARA YDKAAIKCNG KEAVTNFDPS IYDNELNSES TGNAPDHNLD LSLGNSTSNP  360
GNDQALGNQA PNAVTHDQHM PSESNWRNGG IKPKLVNILP KPCYRSNNKD THGRDVHGES  420
ETLRMLSQTH LHSPAFNEMQ QRYGPYRSPG GESQMLQNFA HIHPPNFHFP RSSIGGRIGS  480
DLSLSVADQQ QWQTGPSRYL ATAAASSSFQ QEIRPSSQGW LQKNGLHSLM RPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.125080.0cotyledon| flower| leaf| root| somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8574020.0EU857402.1 Glycine max apetal2-like protein (AP2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579885.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X4
SwissprotP479271e-138AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0B2PGH80.0A0A0B2PGH8_GLYSO; Floral homeotic protein APETALA 2
TrEMBLK7KP570.0K7KP57_SOYBN; Uncharacterized protein
STRINGGLYMA05G18041.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37843463
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-125AP2 family protein